LungMAP

Project Summary

Vivek Sriram (Computer Science and Math), Lina Yang (Biostatistics), and Pablo Ortiz (BME) spent ten weeks working in close collaboration with the Department of Biostatistics and Bioinformatics implementing an image analysis pipeline for immunofluorescence microscopy images of developing mouse lungs.

Themes and Categories
Year
2016

Project Results

Using the LungMAP image atlas (http://lungmap.net), the team developed an image segmentation pipeline to help researchers more effectively utilize open-access images of lungs in various developmental stages. The work of the Data+ team allows biologists and clinical researchers to quantify changes in lung structure during fetal development, and improve understanding of normal lung structure and function.

Download the Executive Summary (PDF)

Article on LungMAP project https://biostat.duke.edu/news/data-wraps

Faculty Sponsors

  • Cliburn Chan, Biostatistics and Bioinformatics
  • Megan Neely, Biostatistics and Bioinformatics

Project Manager

Participants

Disciplines Involved

  • Biostatistics
  • Biology
  • All quantitative STEM

Related People

Related Projects

Alexa Goble (Finance) joined Econ majors Chavez Cheong and Eli Levine in a ten-week exploration of mortgage enforcement actions related to the financial crisis from earlier in this century. Using NLP techniques on mortgage data from Ohio and Massachusetts, the team validated a new experimental approach to understanding the dynamics between state regulatory agencies, mortgage lenders, brokers, and loan originators. This project was a continuation of two previous Data+ projects:

https://bigdata.duke.edu/projects/american-predatory-lending-global-financial-crisis

https://bigdata.duke.edu/projects/american-predatory-lending-and-global-financial-crisis-year-2

 

View the team's project poster here

Watch the team's final presentation on Zoom:

 

Project Lead: Lee Reiners

Project Manager: Malcolm Smith Fraser

Stats/Sociology major Mitchelle Mojekwu joined Neuroscience majors Kassie Hamilton and Zineb Jaidi in a ten-week exploration of data relevant to an upcoming public school zone redistricting in Durham County. Using information acquired from the General Social Survey and the US Census, the team applied modern mathematical and statistical methods for generating proposed redistricting plans, with the aim of providing decision-makers with information they can use to produce school districts that are equitable and reflective of the Durham County student population.

View the team's project poster here

Watch the team's final presentation on Zoom:

 

Faculty Lead: Greg Herschlag

Project Manager: Bernard Coles

 

Pryia Juarez (BME/ECE), Jonathan Pilland (ECE/BME), and Matthew Traum (CS/Econ) spent teen weeks analyzing sensor data synthesized by an agile waveform generator. The team used deep reinforcement learning techniques to understand the performance of different synthetic agents representing potential attackers to the sensor system.

 

View the team's project poster here

Watch the team's final presentation on Zoom:

 

Faculty leads: Robert Calderbank, Vahid Tarokh, Ali Pezeshki

Client leads: Dr. Lauren Huie, Dr. Elizabeth Bentley, Dr. Zola Donovan, Dr. Ashley Prater-Bennette, Dr. Erin Trip

Project Manger: Suya Wu